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local blast software clc genomics workbench 5.5  (CLC Bio)
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CLC Bio local blast software clc genomics workbench 5.5
Dot-plot view of SRs of R. sativus (horizontal) and <t>B.</t> <t>rapa</t> (vertical) genomes. All genomic sequences of predicted genes in the pseudomolecules of scaffolds assigned to the R. sativus linkage map and those in the B. rapa genome were compared with each other, using nucleotide <t>BLAST.</t> The genes of B. rapa with the lowest E -value, which meets <1 E −100, were regarded as the syntenic homologues, and the dots were plotted on the chart (see Materials and Methods). The genetic distances between the scaffolds were converted to physical distances based on the ratio of total length of linkage map and genome size of R. sativus . Axes represent the concatenation of all chromosomes for the corresponding genomes. Gridlines indicate the boundaries between chromosomes.
Local Blast Software Clc Genomics Workbench 5.5, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Dot-plot view of SRs of R. sativus (horizontal) and B. rapa (vertical) genomes. All genomic sequences of predicted genes in the pseudomolecules of scaffolds assigned to the R. sativus linkage map and those in the B. rapa genome were compared with each other, using nucleotide BLAST. The genes of B. rapa with the lowest E -value, which meets <1 E −100, were regarded as the syntenic homologues, and the dots were plotted on the chart (see Materials and Methods). The genetic distances between the scaffolds were converted to physical distances based on the ratio of total length of linkage map and genome size of R. sativus . Axes represent the concatenation of all chromosomes for the corresponding genomes. Gridlines indicate the boundaries between chromosomes.

Journal: DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes

Article Title: Draft Sequences of the Radish ( Raphanus sativus L.) Genome

doi: 10.1093/dnares/dsu014

Figure Lengend Snippet: Dot-plot view of SRs of R. sativus (horizontal) and B. rapa (vertical) genomes. All genomic sequences of predicted genes in the pseudomolecules of scaffolds assigned to the R. sativus linkage map and those in the B. rapa genome were compared with each other, using nucleotide BLAST. The genes of B. rapa with the lowest E -value, which meets <1 E −100, were regarded as the syntenic homologues, and the dots were plotted on the chart (see Materials and Methods). The genetic distances between the scaffolds were converted to physical distances based on the ratio of total length of linkage map and genome size of R. sativus . Axes represent the concatenation of all chromosomes for the corresponding genomes. Gridlines indicate the boundaries between chromosomes.

Article Snippet: For a comparison analysis between the sequences of DNA markers and genomic sequences of B. rapa , homology search was performed using the local BLAST software included in the CLC Genomics Workbench 5.5 (CLC Bio.).

Techniques: Genomic Sequencing